Stem-loop gma-MIR408a

Accession

MI0018647

Description

Glycine max gma-MIR408a precursor miRNA

Literature search

16 open access papers mention gma-MIR408a
(60 sentences)

Sequence

gagacaggacaaagCAGGGGAACAGGCAGAGCAUGgauggagcuaucaacacaauauugucaagaaacugagagugagaggagaaauauguugugguucugcucAUGCACUGCCUCUUCCCUGGCucugucuc
(((((((.....(((.((((((.((((((.((((((.((((((((.(((((.....((.((.....(((...))).....)).))...))))))))))))).)))))).)))))).)))))).))))))))))

Structure

       gacaa   A      C      A      a        u     caaua  g  aagaa   g 
gagacag     agC GGGGAA AGGCAG GCAUGg uggagcua caaca     uu uc     acu  
|||||||     ||| |||||| |||||| |||||| |||||||| |||||     || ||     ||| a
cucuguc     uCG UCCCUU UCCGUC CGUAcu gucuuggu guugu     aa ag     uga  
       -----   G      C      A      c        -     --aua  g  gagag   g 

Annotation confidence Not enough data

Genome context

chr2: 837414-837546 [+]

Mature gma-miR408a-3p

• Accession: MIMAT0021629
• Description: Glycine max gma-miR408a-3p mature miRNA
• Sequence: 105 - AUGCACUGCCUCUUCCCUGGC - 125
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR408a-5p

• Accession: MIMAT0022992
• Description: Glycine max gma-miR408a-5p mature miRNA
• Sequence: 15 - CAGGGGAACAGGCAGAGCAUG - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553