Stem-loop gma-MIR319j

Accession

MI0018675

Description

Glycine max gma-MIR319j precursor miRNA

Literature search

17 open access papers mention gma-MIR319j
(42 sentences)

Sequence

agguaagagagcucucuucagcccacucauaggugauaauaggauuuaauuagcugccgacucauucauacacaugcugagugaauuaaugaauaauacucaguaaaugagugaaugauacgggagacaaauugaaucuuauguuuucuguacUUGGACUGAAGGGAGCUCCCUuuucu
(((.(((.(((((((((((((.(((...(((((.((((.((((((((((((.(((.(((..((((((((.((..(((((((((.(((....)))..)))))))))..)).))))))))..))).)).).)))))))))))))))).)))))...))).))))))))))))).))).)))

Structure

   u   a             c   cuc     u    a            a -  g   ac        a  ca         -a   a 
agg aag gagcucucuucag cca   auagg gaua uaggauuuaauu g cu ccg  ucauucau ca  ugcugagug  auu a
||| ||| ||||||||||||| |||   ||||| |||| |||||||||||| | || |||  |||||||| ||  |||||||||  |||  
ucu uUC CUCGAGGGAAGUC GGU   ugucu uugu auucuaaguuaa c ga ggc  aguaagug gu  augacucau  uaa u
   u   C             A   Uca     u    -            a a  g   au        a  aa         aa   g 

Annotation confidence Not enough data

Genome context

chr11: 1382971-1383149 [+]

Mature gma-miR319j

• Accession: MIMAT0021664
• Description: Glycine max gma-miR319j mature miRNA
• Sequence: 154 - UUGGACUGAAGGGAGCUCCCU - 174
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553