Stem-loop gma-MIR319k

Accession

MI0018676

Description

Glycine max gma-MIR319k precursor miRNA

Literature search

18 open access papers mention gma-MIR319k
(46 sentences)

Sequence

18245462 reads, 56333.0 reads per million, 178 experiments

aguuuaagAGAGCUUCCUUCAGUCCACUCauggauggguagaggguuugaauuagcugcugacucauucauucaaacacaauagaauuaguaucaugguaugcuauugugaaugugugaaugaugcaggagguaaaguucauccuuuucuugucuuugcUUGGACUGAAGGGAGCUCCCUuuuacu
(((..(((.(((((((((((((((((..((.(((((((.((((((..(((((((.((.(((..((((((((.((..((((((((.((((......))))...))))))))..)).))))))))..))).)).))..))))).))))))))))))).))..))))))))))))))))).)))..)))

Structure

   uu   A                 CU  u       u      uu     --  g  g   ac        u  aa        --a    gu 
agu  aag GAGCUUCCUUCAGUCCA  Ca ggauggg agaggg  ugaau  ua cu cug  ucauucau ca  cacaauag   auua  a
|||  ||| |||||||||||||||||  || ||||||| ||||||  |||||  || || |||  |||||||| ||  ||||||||   ||||   
uca  uUC CUCGAGGGAAGUCAGGU  gu ucuguuc uuuucc  acuug  au ga gac  aguaagug gu  guguuauc   uggu  u
   uu   C                 Uc  u       -      -u     aa  g  g   gu        u  aa        gua    ac 

Annotation confidence High

Genome context

chr11: 28073920-28074105 [+]

Mature gma-miR319k-5p

• Accession: MIMAT0054257
• Description: Glycine max gma-miR319k-5p mature miRNA
• Sequence: 9 - AGAGCUUCCUUCAGUCCACUC - 29
• Evidence: experimental ; unknown

Mature gma-miR319k-3p

• Accession: MIMAT0021665
• Description: Glycine max gma-miR319k-3p mature miRNA
• Sequence: 160 - UUGGACUGAAGGGAGCUCCCU - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307