Stem-loop gma-MIR171l

Accession

MI0018687

Description

Glycine max gma-MIR171l precursor miRNA

Literature search

16 open access papers mention gma-MIR171l
(38 sentences)

Sequence

45275 reads, 192.0 reads per million, 171 experiments

gagaaagCGAUGUUGGUGAGGUUCAAUCcgaagacggauuuacauguagaagcaguaaaauacgaucucagaUUGAGCCGCGCCAAUAUCACUUuauc
...((((.((((((((((.(((((((((.((.((((..(((((.(((....))))))))...)).)))).))))))))).)))))))))).))))...

Structure

gag    C          A         c  a  -  -ga     a   a 
   aaag GAUGUUGGUG GGUUCAAUC ga ga cg   uuuac ugu g
   |||| |||||||||| ||||||||| || || ||   ||||| |||  
   uUUC CUAUAACCGC CCGAGUUag cu cu gc   aaaug acg a
cua    A          G         a  -  a  aua     -   a 

Annotation confidence High

Genome context

chr17: 8830894-8830991 [-]

Mature gma-miR171l-5p

• Accession: MIMAT0021678
• Description: Glycine max gma-miR171l-5p mature miRNA
• Sequence: 8 - CGAUGUUGGUGAGGUUCAAUC - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR171l-3p

• Accession: MIMAT0054264
• Description: Glycine max gma-miR171l-3p mature miRNA
• Sequence: 73 - UUGAGCCGCGCCAAUAUCACUU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307