Stem-loop mtr-MIR5554a

Accession

MI0019075

Description

Medicago truncatula mtr-MIR5554a precursor miRNA

Literature search

1 open access papers mention mtr-MIR5554a
(1 sentences)

Sequence

1484 reads, 12.0 reads per million, 110 experiments

cagcaugcgaUGUGCAUCUUGAACAAUGGUAUucaagugucaagaaaugcaccucauucuuuugaaacuugaauACCAUCGUUGCAGAUGCUCAUCGgauguugg
((((((.(((((.((((((..(((.(((((((((((((.((((((((((.....)))).)))))).))))))))))))).)))..)))))).))))).)))))).

Structure

-      g     U      UG   A             g      -    c 
 cagcau cgaUG GCAUCU  AAC AUGGUAUucaagu ucaaga aaug a
 |||||| ||||| ||||||  ||| ||||||||||||| |||||| |||| c
 guugua GCUAC CGUAGA  UUG UACCAuaaguuca aguuuu uuac c
g      g     U      CG   C             a      c    u 

Annotation confidence High

Genome context

chr1: 32660180-32660284 [-]

Mature mtr-miR5554a-5p

• Accession: MIMAT0022199
• Description: Medicago truncatula mtr-miR5554a-5p mature miRNA
• Sequence: 11 - UGUGCAUCUUGAACAAUGGUAU - 32
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5554a-3p

• Accession: MIMAT0022200
• Description: Medicago truncatula mtr-miR5554a-3p mature miRNA
• Sequence: 75 - ACCAUCGUUGCAGAUGCUCAUCG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367