Stem-loop mtr-MIR2619b

Accession

MI0019077

Description

Medicago truncatula mtr-MIR2619b precursor miRNA

Literature search

1 open access papers mention mtr-MIR2619b
(1 sentences)

Sequence

38277 reads, 314.0 reads per million, 111 experiments

aaacagccccauauguuUUGAUUCUUUGGCAGUUUUGGccccccaaggcaaaauaaaaauaaaaaauuugacacauggcaccucacuuagggugccacgucagcguugaccgagucaacacugaacuggggguuCAAAACUGCCAAAGAAUCAAuacauagggggcugauu
...(((((((.(((((.(((((((((((((((((((((.((((((..............................((((((((......))))))))..((((.((((((...)))))).))))..)))))).))))))))))))))))))))).))))).)))))))...

Structure

aaa       a     u                     c      aggcaaaauaaaaauaaaaaauuugacacauggcaccucacuuagggugccacg    c      c 
   cagcccc uaugu UUGAUUCUUUGGCAGUUUUGG ccccca                                                      ucag guugac  
   ||||||| ||||| ||||||||||||||||||||| ||||||                                                      |||| |||||| g
   gucgggg auaca AACUAAGAAACCGUCAAAACu gggggu                                                      aguc caacug  
uua       g     u                     u      ----------------------------------------------------ca    a      a 

Annotation confidence Medium

Genome context

chr4: 7493105-7493275 [+]

Mature mtr-miR2619b-5p

• Accession: MIMAT0022203
• Description: Medicago truncatula mtr-miR2619b-5p mature miRNA
• Sequence: 18 - UUGAUUCUUUGGCAGUUUUGG - 38
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2619b-3p

• Accession: MIMAT0022204
• Description: Medicago truncatula mtr-miR2619b-3p mature miRNA
• Sequence: 135 - CAAAACUGCCAAAGAAUCAA - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367