Stem-loop mtr-MIR2592bl

Accession

MI0019078

Description

Medicago truncatula mtr-MIR2592bl precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bl
(2 sentences)

Sequence

1465 reads, 15.0 reads per million, 110 experiments

aguuguuGUUUGGCAAGUUUGAAUUUaccucauucaaagguaagauaauuguuuuaguuggaaggugccuuccaacuacaacaauuguccuccucuggauggaguaauucAAACUUGUUAAACGGCAGGA
..(((((((((((((((((((((((.((.(((((((.(((...((((((((((.((((((((((....)))))))))).))))))))))..))).))))))).)))))))))))))))))))))))))..

Structure

ag                       U  c       a   uaa          u          g 
  uuguuGUUUGGCAAGUUUGAAUU ac ucauuca agg   gauaauuguu uaguuggaag u
  ||||||||||||||||||||||| || ||||||| |||   |||||||||| ||||||||||  
  GACGGCAAAUUGUUCAAAcuuaa ug gguaggu ucc   cuguuaacaa aucaaccuuc g
AG                       -  a       c   -uc          c          c 

Annotation confidence Low

Genome context

chr4: 20867262-20867391 [+]

Mature mtr-miR2592bl-5p

• Accession: MIMAT0022205
• Description: Medicago truncatula mtr-miR2592bl-5p mature miRNA
• Sequence: 8 - GUUUGGCAAGUUUGAAUUU - 26
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bl-3p

• Accession: MIMAT0022206
• Description: Medicago truncatula mtr-miR2592bl-3p mature miRNA
• Sequence: 111 - AAACUUGUUAAACGGCAGGA - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367