Stem-loop mtr-MIR5554b

Accession

MI0019079

Description

Medicago truncatula mtr-MIR5554b precursor miRNA

Sequence

cagcaugcgaUGUGCAUCUUGAACAAUGGUAUucaagugucaaggaaugcaccucauucuuuugacacuugaauACCAUCGUUGCAGAUGCUCAUCggaugucgg
..((((.(((((.((((((..(((.((((((((((((((((((((((((.....))))).))))))))))))))))))).)))..)))))).))))).))))...

Structure

-ca    g     U      UG   A                   -     c 
   gcau cgaUG GCAUCU  AAC AUGGUAUucaagugucaag gaaug a
   |||| ||||| ||||||  ||| ||||||||||||||||||| ||||| c
   ugua gCUAC CGUAGA  UUG UACCAuaaguucacaguuu cuuac c
ggc    g     U      CG   C                   u     u 

Annotation confidence Not enough data

Genome context

chr8: 29332267-29332371 [+]

Mature mtr-miR5554b-5p

• Accession: MIMAT0022207
• Description: Medicago truncatula mtr-miR5554b-5p mature miRNA
• Sequence: 11 - UGUGCAUCUUGAACAAUGGUAU - 32
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5554b-3p

• Accession: MIMAT0022208
• Description: Medicago truncatula mtr-miR5554b-3p mature miRNA
• Sequence: 75 - ACCAUCGUUGCAGAUGCUCAUC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367