Stem-loop mtr-MIR5274b

Accession

MI0019080

Description

Medicago truncatula mtr-MIR5274b precursor miRNA

Literature search

1 open access papers mention mtr-MIR5274b
(1 sentences)

Sequence

32722 reads, 307.0 reads per million, 111 experiments

gcguuccgcaAUAUGACGGAGUGUAAAUGCCUAaguaucagacuuaccauagcuugauacauaggcAUUUACACUCCGUCAUAUUGuagaacgca
((((((.((((((((((((((((((((((((((.(((((((.((......)).))))))).)))))))))))))))))))))))))).)))))).

Structure

-      c                          a       a  ua 
 gcguuc gcaAUAUGACGGAGUGUAAAUGCCUA guaucag cu  c
 |||||| |||||||||||||||||||||||||| ||||||| ||   
 cgcaag uGUUAUACUGCCUCACAUUUAcggau cauaguu ga  c
a      a                          a       c  ua 

Annotation confidence High

Genome context

chr4: 12634036-12634130 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5274b

Mature mtr-miR5274b-5p

• Accession: MIMAT0022209
• Description: Medicago truncatula mtr-miR5274b-5p mature miRNA
• Sequence: 11 - AUAUGACGGAGUGUAAAUGCCUA - 33
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5274b-3p

• Accession: MIMAT0022210
• Description: Medicago truncatula mtr-miR5274b-3p mature miRNA
• Sequence: 67 - AUUUACACUCCGUCAUAUUG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367