Stem-loop mtr-MIR5556

Accession

MI0019081

Description

Medicago truncatula mtr-MIR5556 precursor miRNA

Sequence

gucaagaucauuUGGAAUUCUUCCGCCAUCCAAcgaaccuuagagaacagcuccacaauaguugagacuccuugaccuccaagguucauuUGAUGACGGAAGAAAUCCAAAugaucuuguu
..((((((((((((((.((((((((.((((.((.(((((((.(((..((((((.((....)).))).....)))..))).))))))).)).)))).)))))))).))))))))))))))..

Structure

gu              A        C    C  c       a   aa   -----   c  a 
  caagaucauuUGGA UUCUUCCG CAUC AA gaaccuu gag  cag     cuc ac a
  |||||||||||||| |||||||| |||| || ||||||| |||  |||     ||| ||  
  guucuaguAAACCU AAGAAGGC GUAG uu cuuggaa cuc  guu     gag ug u
uu              A        A    U  a       c   ca   ccuca   u  a 

Annotation confidence Not enough data

Genome context

chr4: 25278547-25278667 [-]

Mature mtr-miR5556-5p

• Accession: MIMAT0022211
• Description: Medicago truncatula mtr-miR5556-5p mature miRNA
• Sequence: 13 - UGGAAUUCUUCCGCCAUCCAA - 33
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5556-3p

• Accession: MIMAT0022212
• Description: Medicago truncatula mtr-miR5556-3p mature miRNA
• Sequence: 91 - UGAUGACGGAAGAAAUCCAAA - 111
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553