Stem-loop mtr-MIR5557

Accession

MI0019083

Description

Medicago truncatula mtr-MIR5557 precursor miRNA

Sequence

caggacacuucucAACAAGUACUAAGGAAGCACAaucagaaaguaacucuuuacuuuguugugcccauucagugcauuuagccaucaaccucuccuucugaacaucacauuuguucacuacugauuucaaaucaucucuuuguuucacaagaucaucaauuuguaaagagaguuuguguaucugagcauuuguaguugaagauucacugucaauuuggguuaguguacucuuugcacuccuaagcuuguucauaauaucaguuuucgaauaaagaaguugguugUGCUUCCUUAGUACUUGUUGAuaacugucuu
.((((((.((.(((((((((((((((((((((((((((((((((((....)))))))...((((......((((((((.(.(((............(((.(((...(((..((((((.....(((..(((((..(((((((.....(((((........)))))))))))))))))...)))))))))..))).)))..))).............))).).))))))))....))))((..(((((.((.......)).)))))..)).........)))))))))))))))))))))))))))).)).))))))

Structure

c      c  c                            -------------------aaaguaacucuuuacuuuguu    ccauuc        u g   -ucaaccucuccu   -g   auc   uu      cuacu   -uu     ca       guuuc     auc 
 aggaca uu ucAACAAGUACUAAGGAAGCACAaucag                                        gugc      agugcauu a cca             ucu  aac   aca  uguuca     gau   caaau  ucucuuu     acaag   a
 |||||| || ||||||||||||||||||||||||||||                                        ||||      |||||||| | |||             |||  |||   |||  ||||||     |||   |||||  |||||||     |||||    
 uucugu aa AGUUGUUCAUGAUUCCUUCGUguugguu                                        cacg      ucauguga u ggu             aga  uug   ugu  acgagu     cua   guuug  agagaaa     uguuu   u
-      c  u                            gaagaaauaagcuuuugacuauaauacuuguucgaauccu    --uuuc        u g   uuaacugucacuu   ag   --a   uu      -----   ugu     --       -----     aac 

Annotation confidence Not enough data

Genome context

chr5: 5907137-5907451 [+]

Mature mtr-miR5557-5p

• Accession: MIMAT0022215
• Description: Medicago truncatula mtr-miR5557-5p mature miRNA
• Sequence: 14 - AACAAGUACUAAGGAAGCACA - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5557-3p

• Accession: MIMAT0022216
• Description: Medicago truncatula mtr-miR5557-3p mature miRNA
• Sequence: 285 - UGCUUCCUUAGUACUUGUUGA - 305
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367