Stem-loop mtr-MIR2592bn

Accession

MI0019084

Description

Medicago truncatula mtr-MIR2592bn precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bn
(2 sentences)

Sequence

cucgagcauuucgCUCGGCAUUCAUGUUUUUCCUUugaaaauauuaaauucuuguuggguugguuuagaugaagguauuaagugucaagaaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcacaccuaacaaaaauuuauucuuuucaaaGGAAAACAUGAAUGUCGGGUGaaaugcuuga
.(((((((((((((((((((((((((((((.((((((((((...((((((.(((((((((((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).)).))))))))).))))))...)))))))))))))))))))))))))))))))))))))))

Structure

c                             U          uau      c         -  g         a     -          -       a 
 ucgagcauuucgCUCGGCAUUCAUGUUUU CCUUugaaaa   uaaauu uuguugggu ug uuuagauga gguau uaagugucaa gaaauga  
 ||||||||||||||||||||||||||||| ||||||||||   |||||| ||||||||| || ||||||||| ||||| |||||||||| ||||||| c
 aguucguaaaGUGGGCUGUAAGUACAAAA GGaaacuuuu   auuuaa aacaaucca ac aaaucuacu ccaua guucacgguu cuuuacu  
-                             -          cuu      a         c  g         a     a          g       c 

Annotation confidence Not enough data

Genome context

chr5: 8281152-8281345 [+]

Mature mtr-miR2592bn-5p

• Accession: MIMAT0022217
• Description: Medicago truncatula mtr-miR2592bn-5p mature miRNA
• Sequence: 14 - CUCGGCAUUCAUGUUUUUCCUU - 35
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bn-3p

• Accession: MIMAT0022218
• Description: Medicago truncatula mtr-miR2592bn-3p mature miRNA
• Sequence: 164 - GGAAAACAUGAAUGUCGGGUG - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367