Stem-loop mtr-MIR5559

Accession

MI0019086

Description

Medicago truncatula mtr-MIR5559 precursor miRNA

Sequence

uauuuccuuuUACUUGGUGAAUUGUUGGAUCauucuguaucaaucaaccacauugaagcuucauguauaagacaagaucaacgauauucaaagaagaaacacagaacgaUCUAAUUAUUCACCAAGUAAAaggauacg
....((((((((((((((((((.((((((((.((((((.(((((.......)))))....((.(((.....))).)).........(((......)))..)))))).)))))))).))))))))))))))))))....

Structure

uauu                  U        a      -------------------------------------------a     ca 
    uccuuuUACUUGGUGAAU GUUGGAUC uucugu                                            ucaau  a
    |||||||||||||||||| |||||||| ||||||                                            |||||  c
    aggaAAAUGAACCACUUA UAAUCUag aagaca                                            aguua  c
gcau                  U        c      caaagaagaaacuuauagcaacuagaacagaauauguacuucga     ca 

Annotation confidence Not enough data

Genome context

chr6: 1058333-1058470 [+]

Mature mtr-miR5559-5p

• Accession: MIMAT0022221
• Description: Medicago truncatula mtr-miR5559-5p mature miRNA
• Sequence: 11 - UACUUGGUGAAUUGUUGGAUC - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5559-3p

• Accession: MIMAT0022222
• Description: Medicago truncatula mtr-miR5559-3p mature miRNA
• Sequence: 110 - UCUAAUUAUUCACCAAGUAAA - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553