Stem-loop mtr-MIR5560

Accession

MI0019087

Description

Medicago truncatula mtr-MIR5560 precursor miRNA

Sequence

770 reads, 8.0 reads per million, 105 experiments

agucggcaauccucucauucacucagccgguacAUCAUUGGUCGUUGGAAUUUGAUcaggauccaacaacuacaugaUGUGCCGGCUCAAUGAAUGCGgagaauuucugac
.(((((.(((.((((((((((...((((((((((((((((((.((((((.(((.....))))))))).)))).))))))))))))))...)))))).)))).))).)))))

Structure

a     c   c    -      cuc              -    C      A   G 
 gucgg aau cucu cauuca   agccgguacAUCAU UGGU GUUGGA UUU A
 ||||| ||| |||| ||||||   |||||||||||||| |||| |||||| ||| U
 caguc uua gagG GUAAGU   UCGGCCGUGUagua auca caaccu agg c
-     u   a    C      AAC              c    a      -   a 

Annotation confidence Low

Genome context

chr6: 4372015-4372125 [+]

Mature mtr-miR5560-5p

• Accession: MIMAT0022223
• Description: Medicago truncatula mtr-miR5560-5p mature miRNA
• Sequence: 34 - AUCAUUGGUCGUUGGAAUUUGAU - 56
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5560-3p

• Accession: MIMAT0022224
• Description: Medicago truncatula mtr-miR5560-3p mature miRNA
• Sequence: 78 - UGUGCCGGCUCAAUGAAUGCG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367