Stem-loop mtr-MIR5560

Accession

MI0019087

Description

Medicago truncatula mtr-MIR5560 precursor miRNA

Sequence

agucggcaauccuCUCAUUCACUCAGCCGGUACAucauuggucguuggaauuugaucaggauccaacaacuacaugaugUGCCGGCUCAAUGAAUGCGGAGaauuucugac
.(((((.(((.((((((((((...((((((((((((((((((.((((((.(((.....))))))))).)))).))))))))))))))...)))))).)))).))).)))))

Structure

a     c   c    -      CUC              -    c      a   g 
 gucgg aau cuCU CAUUCA   AGCCGGUACAucau uggu guugga uuu a
 ||||| ||| |||| ||||||   |||||||||||||| |||| |||||| ||| u
 caguc uua GAGG GUAAGU   UCGGCCGUguagua auca caaccu agg c
-     u   a    C      AAC              c    a      -   a 

Annotation confidence Not enough data

Genome context

chr6: 4372015-4372125 [+]

Mature mtr-miR5560-5p

• Accession: MIMAT0022223
• Description: Medicago truncatula mtr-miR5560-5p mature miRNA
• Sequence: 14 - CUCAUUCACUCAGCCGGUACA - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5560-3p

• Accession: MIMAT0022224
• Description: Medicago truncatula mtr-miR5560-3p mature miRNA
• Sequence: 80 - UGCCGGCUCAAUGAAUGCGGAG - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367