Stem-loop mtr-MIR5554c

Accession

MI0019088

Description

Medicago truncatula mtr-MIR5554c precursor miRNA

Sequence

caacaugugaUGUGCAUCUUGAACAAUGGUAUucaagugucaaggaaugcaccucauucuuuugacacuugaauACCAUCGUUGCAGAUGCUCAUCgaaugucgg
..((((.(((((.((((((..(((.((((((((((((((((((((((((.....))))).))))))))))))))))))).)))..)))))).))))).))))...

Structure

-ca    g     U      UG   A                   -     c 
   acau ugaUG GCAUCU  AAC AUGGUAUucaagugucaag gaaug a
   |||| ||||| ||||||  ||| ||||||||||||||||||| ||||| c
   ugua gCUAC CGUAGA  UUG UACCAuaaguucacaguuu cuuac c
ggc    a     U      CG   C                   u     u 

Annotation confidence Not enough data

Genome context

chr7: 22600323-22600427 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5554c

Mature mtr-miR5554c-5p

• Accession: MIMAT0022225
• Description: Medicago truncatula mtr-miR5554c-5p mature miRNA
• Sequence: 11 - UGUGCAUCUUGAACAAUGGUAU - 32
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5554c-3p

• Accession: MIMAT0022226
• Description: Medicago truncatula mtr-miR5554c-3p mature miRNA
• Sequence: 75 - ACCAUCGUUGCAGAUGCUCAUC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367