Stem-loop mtr-MIR5563

Accession

MI0019091

Description

Medicago truncatula mtr-MIR5563 precursor miRNA

Sequence

caauuuuaaaUGAUAUCAGGCAACUCGGUCCuucuguuaacuuggccaacugucaaaccaguaacggaaggACUGAGUUGCCUAAUGUCGUUcauaauugg
(((((...((((((((.((((((((((((((((((((((..(((((.....))))).....)))))))))))))))))))))).))))))))...))))).

Structure

-     uua        C                      ---ac     c 
 caauu   aaUGAUAU AGGCAACUCGGUCCuucuguua     uuggc a
 |||||   |||||||| ||||||||||||||||||||||     ||||| a
 guuaa   UUGCUGUA UCCGUUGAGUCAggaaggcaau     aacug c
g     uac        A                      gacca     u 

Annotation confidence Not enough data

Genome context

chr4: 42479761-42479861 [+]

Mature mtr-miR5563-5p

• Accession: MIMAT0022231
• Description: Medicago truncatula mtr-miR5563-5p mature miRNA
• Sequence: 11 - UGAUAUCAGGCAACUCGGUCC - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5563-3p

• Accession: MIMAT0022232
• Description: Medicago truncatula mtr-miR5563-3p mature miRNA
• Sequence: 72 - ACUGAGUUGCCUAAUGUCGUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367