Stem-loop mtr-MIR167b

Accession

MI0019092

Description

Medicago truncatula mtr-MIR167b precursor miRNA

Literature search

3 open access papers mention mtr-MIR167b
(14 sentences)

Sequence

caaugacaguUGAAGCUGCCAGCAUGAUCUGugcuuuccuuccuguguauauacuuuaauuuccagcugaauuuaaauauaaccaaaaaaauaaauauguuuggucuaaauuuugaucaaacuuauauauauuuuugcuuauguuuaagucuggggugaguuuauuugugguaagaacaGAUCAUGUUGGAGCUUCACCuguuaaau
...((((((.(((((((.((((((((((((((.(((.((.....(((.((.((((.......((((....((((((((((((.((((((.(((.(((.((((((((........)))))))).))).))).)))))).)))))))))))))))))))).)).)))....)).))).))))))))))))))))))))).))))))...

Structure

caa      u       G              g   u  uuccu   u  a    uuaauuu    cuga            c      a   a   u        uaa 
   ugacag UGAAGCU CCAGCAUGAUCUGu cuu cc     gug au uacu       ccag    auuuaaauauaa caaaaa aua aua guuugguc   a
   |||||| ||||||| |||||||||||||| ||| ||     ||| || ||||       ||||    |||||||||||| |||||| ||| ||| ||||||||    
   auuguC ACUUCGA GGUUGUACUAGaca gaa gg     uau ug gugg       gguc    ugaauuuguauu guuuuu uau uau caaacuag   u
uaa      C       -              a   u  -uguu   u  a    -------    ----            c      a   a   u        uuu 

Annotation confidence Not enough data

Genome context

chr7: 37444819-37445025 [+]

Mature mtr-miR167b-5p

• Accession: MIMAT0022233
• Description: Medicago truncatula mtr-miR167b-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR167b-3p

• Accession: MIMAT0022234
• Description: Medicago truncatula mtr-miR167b-3p mature miRNA
• Sequence: 180 - GAUCAUGUUGGAGCUUCACC - 199
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553