Stem-loop cel-mir-5592-1

Accession

MI0019153

Description

Caenorhabditis elegans cel-mir-5592-1 precursor miRNA mir-5592

Gene
family

RF03618; mir-5592

Sequence

30572 reads, 359 reads per million, 16 experiments

CGGCCCUUACCGUUUAAUACAUGuucccggucgaugcaccaUGUAUUAAACGGUAAGGGCCGGC
(((((((((((((((((((((((................)))))))))))))))))))))))..

Structure

--                       uucccgg 
  CGGCCCUUACCGUUUAAUACAUG       u
  |||||||||||||||||||||||        
  GCCGGGAAUGGCAAAUUAUGUac       c
CG                       cacguag 

Annotation confidence Not enough data

Genome context

chrX: 13759245-13759308 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-5592-1

Mature cel-miR-5592-5p

• Accession: MIMAT0022305
• Description: Caenorhabditis elegans cel-miR-5592-5p mature miRNA
• Sequence: 1 - CGGCCCUUACCGUUUAAUACAUG - 23
• Evidence: not_experimental

Mature cel-miR-5592-3p

• Accession: MIMAT0022306
• Description: Caenorhabditis elegans cel-miR-5592-3p mature miRNA
• Sequence: 42 - UGUAUUAAACGGUAAGGGCCGGC - 64
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52