miRBase entry: cin-mir-5597

Stem-loop cin-mir-5597


Accession
MI0019161
Description
Ciona intestinalis cin-mir-5597 precursor miRNA


Sequence

101 reads, 35 reads per million, 2 experiments
UGACAUGAUUGGUGCAGUAUACauuUACUAGCUUUGGAAAUGUUGCCU
.(((((.......((((((......)))).)).......)))))....

Structure
---U     GAUUGGU  -    UA 
    GACAU       GC AGUA  C
    |||||       || ||||   
    UUGUA       CG UCAU  a
UCCG     AAGGUUU  A    uu 


Annotation confidence Not enough data
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Genome context
scaffold_554: 1921-1968 [-]

Database links

Mature cin-miR-5597-5p

Accession MIMAT0022317
Description Ciona intestinalis cin-miR-5597-5p mature miRNA
Sequence 1 - UGACAUGAUUGGUGCAGUAUAC - 22
Evidence not_experimental

Mature cin-miR-5597-3p

Accession MIMAT0022318
Description Ciona intestinalis cin-miR-5597-3p mature miRNA
Sequence 26 - UACUAGCUUUGGAAAUGUUGCCU - 48
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52