Stem-loop cin-mir-5598

Accession

MI0019162

Description

Ciona intestinalis cin-mir-5598 precursor miRNA

Literature search

1 open access papers mention cin-mir-5598
(2 sentences)

Sequence

1118 reads, 1050.0 reads per million, 9 experiments

GUGGUUAGCGCGCCUGCCcguaacccagagggaaUGGGUUCAAGGCUCGUCGCUGCUAC
(((((.(((((((((((((((..((....))..))))))...))))..).)))))))))

Structure

     U    - --    ---      aa  c 
GUGGU AGCG C  GCCU   GCCcgu  cc a
||||| |||| |  ||||   ||||||  ||  
CAUCG UCGC G  CGGA   UGGGUa  gg g
     -    U CU    ACU      ag  a 

Annotation confidence Medium

Genome context

ref|NC_020177.1|: 1750919-1750977 [-]

Mature cin-miR-5598-5p

• Accession: MIMAT0022319
• Description: Ciona intestinalis cin-miR-5598-5p mature miRNA
• Sequence: 1 - GUGGUUAGCGCGCCUGCC - 18
• Evidence: not_experimental

Mature cin-miR-5598-3p

• Accession: MIMAT0022320
• Description: Ciona intestinalis cin-miR-5598-3p mature miRNA
• Sequence: 35 - UGGGUUCAAGGCUCGUCGCUGCUAC - 59
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52