Stem-loop cin-mir-5599

Accession

MI0019163

Description

Ciona intestinalis cin-mir-5599 precursor miRNA

Sequence

132 reads, 54 reads per million, 2 experiments

UUUUGAUCUUUCCUGUGCUUUAAccguggggacaaauuuuuUACAGUAGUUGGUGUAGGUUGAAAG
(((((((((..((...(((...((.(((((((.....))))))).))))).))...))))))))).

Structure

-         -UU  UGU   UUA  c       c 
 UUUUGAUCU   CC   GCU   Ac gugggga a
 |||||||||   ||   |||   || ||||||| a
 AAAGUUGGA   GG   UGA   UG CAUuuuu a
G         UGU  --U   ---  A       u 

Annotation confidence Not enough data

Genome context

scaffold_194: 69248-69313 [+]

Mature cin-miR-5599-5p

• Accession: MIMAT0022321
• Description: Ciona intestinalis cin-miR-5599-5p mature miRNA
• Sequence: 1 - UUUUGAUCUUUCCUGUGCUUUAA - 23
• Evidence: not_experimental

Mature cin-miR-5599-3p

• Accession: MIMAT0022322
• Description: Ciona intestinalis cin-miR-5599-3p mature miRNA
• Sequence: 42 - UACAGUAGUUGGUGUAGGUUGAAAG - 66
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52