Stem-loop cin-mir-5600

Accession

MI0019164

Description

Ciona intestinalis cin-mir-5600 precursor miRNA

Sequence

120 reads, 38 reads per million, 2 experiments

UCGAAACCAAAAUACUCCAGUUUgaucccggucaacuuacacaaAGUGGAAUGUUUUGUUUCGAAC
(((((((.((((((.((((.((((.....(.....).....)))).)))).)))))))))))))..

Structure

--       C      C    G    auccc g 
  UCGAAAC AAAAUA UCCA UUUg     g u
  ||||||| |||||| |||| ||||     | c
  AGCUUUG UUUUGU AGGU Aaac     c a
CA       -      A    G    acauu a 

Annotation confidence Not enough data

Genome context

7q: 2660071-2660136 [+]

Mature cin-miR-5600-5p

• Accession: MIMAT0022323
• Description: Ciona intestinalis cin-miR-5600-5p mature miRNA
• Sequence: 1 - UCGAAACCAAAAUACUCCAGUUU - 23
• Evidence: not_experimental

Mature cin-miR-5600-3p

• Accession: MIMAT0022324
• Description: Ciona intestinalis cin-miR-5600-3p mature miRNA
• Sequence: 45 - AGUGGAAUGUUUUGUUUCGAAC - 66
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52