Stem-loop cin-mir-5601

Accession

MI0019165

Description

Ciona intestinalis cin-mir-5601 precursor miRNA

Sequence

1001 reads, 240.0 reads per million, 8 experiments

AUGUGCUUCUGUCUAACCAUGUUguccugguaugugggCAUGGUUAUUUAGAGCAUAAGA
.((((((.(((..(((((((((...((........)))))))))))..)))))))))...

Structure

--A      U   UC         Ugu  ugg 
   UGUGCU CUG  UAACCAUGU   cc   u
   |||||| |||  |||||||||   ||    
   AUACGA GAU  AUUGGUACg   gg   a
AGA      -   UU         ---  ugu 

Annotation confidence High

Genome context

ref|NC_020173.1|: 3067402-3067461 [+]

Mature cin-miR-5601-5p

• Accession: MIMAT0022325
• Description: Ciona intestinalis cin-miR-5601-5p mature miRNA
• Sequence: 1 - AUGUGCUUCUGUCUAACCAUGUU - 23
• Evidence: not_experimental

Mature cin-miR-5601-3p

• Accession: MIMAT0022326
• Description: Ciona intestinalis cin-miR-5601-3p mature miRNA
• Sequence: 39 - CAUGGUUAUUUAGAGCAUAAGA - 60
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52