miRBase entry: cin-mir-5596b

Stem-loop cin-mir-5596b


Accession
MI0019166
Description
Ciona intestinalis cin-mir-5596b precursor miRNA


Sequence

66 reads, 33 reads per million, 2 experiments
AUUCUAUCUUAUUCCACAGUACuauaaguauugaaauauaauauaguAUGGUGGGGGAAGAUGGGACAC
.(((((((((.((((((.((((((((.((((....))))..)))))))).)))))).)))))))))...

Structure
--A         A      A        -a    u 
   UUCUAUCUU UUCCAC GUACuaua  guau g
   ||||||||| |||||| ||||||||  ||||  
   AGGGUAGAA GGGGUG UAugauau  uaua a
CAC         G      G        aa    a 


Annotation confidence Not enough data
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Genome context
14q: 1660166-1660234 [-]

Database links

Mature cin-miR-5596b-5p

Accession MIMAT0022327
Description Ciona intestinalis cin-miR-5596b-5p mature miRNA
Sequence 1 - AUUCUAUCUUAUUCCACAGUAC - 22
Evidence not_experimental

Mature cin-miR-5596b-3p

Accession MIMAT0022328
Description Ciona intestinalis cin-miR-5596b-3p mature miRNA
Sequence 48 - AUGGUGGGGGAAGAUGGGACAC - 69
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52