Stem-loop cin-mir-5606

Accession

MI0019172

Description

Ciona intestinalis cin-mir-5606 precursor miRNA

Sequence

21 reads, 8 reads per million, 2 experiments

GCAGCGAAGAGACAGGAGAGgaaccggaggaagagaucgccgggguuccauCUCCUGUGAACGAGACCGCCG
((.((......((((((((((((((...((.........))..)))))).))))))))......).).))..

Structure

--  A - GAAGAG        -      gga  aag 
  GC G C      ACAGGAGA Ggaacc   gg   a
  || | |      |||||||| ||||||   ||   g
  CG C G      UGUCCUCu ccuugg   cc   a
GC  C A AGCAAG        a      -gg  gcu 

Annotation confidence Not enough data

Genome context

5q: 1078162-1078233 [-]

Mature cin-miR-5606-5p

• Accession: MIMAT0022339
• Description: Ciona intestinalis cin-miR-5606-5p mature miRNA
• Sequence: 1 - GCAGCGAAGAGACAGGAGAG - 20
• Evidence: not_experimental

Mature cin-miR-5606-3p

• Accession: MIMAT0022340
• Description: Ciona intestinalis cin-miR-5606-3p mature miRNA
• Sequence: 52 - CUCCUGUGAACGAGACCGCCG - 72
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52