Stem-loop cin-mir-5606

Accession

MI0019172

Description

Ciona intestinalis cin-mir-5606 precursor miRNA

Literature search

1 open access papers mention cin-mir-5606
(1 sentences)

Sequence

378 reads, 346.0 reads per million, 9 experiments

gcagcgaagagacaggagaggAACCGGAGGAAGAGAUCGCCgggguuccaUCUCCUGUGAACGAGACCGCCG
((.((......((((((((((((((...((.........))..)))))).))))))))......).).))..

Structure

--  a - gaagag        -      GGA  AAG 
  gc g c      acaggaga ggAACC   GG   A
  || | |      |||||||| ||||||   ||   G
  CG C G      UGUCCUCU ccuugg   CC   A
GC  C A AGCAAG        a      -gg  GCU 

Annotation confidence Low

Genome context

ref|NW_004190652.1|: 7047-7118 [-]

Mature cin-miR-5606-5p

• Accession: MIMAT0022339
• Description: Ciona intestinalis cin-miR-5606-5p mature miRNA
• Sequence: 22 - AACCGGAGGAAGAGAUCGCC - 41
• Evidence: not_experimental

Mature cin-miR-5606-3p

• Accession: MIMAT0022340
• Description: Ciona intestinalis cin-miR-5606-3p mature miRNA
• Sequence: 51 - UCUCCUGUGAACGAGACCGCCG - 72
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52