miRBase entry: cin-mir-5607

Stem-loop cin-mir-5607


Accession
MI0019173
Description
Ciona intestinalis cin-mir-5607 precursor miRNA


Sequence

24 reads, 11 reads per million, 2 experiments
UGUGGUAUUGAGAAUUAAAUUUucuuguaaaAUUUAAUUUUCGUCCCAAAU
..(((...(((((((((((((((.....)))))))))))))))..)))...

Structure
-UG   UAU               c 
   UGG   UGAGAAUUAAAUUUu u
   |||   ||||||||||||||| u
   ACC   GCUUUUAAUUUAaaa g
UAA   -CU               u 


Annotation confidence Not enough data
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Genome context
1q: 4003739-4003789 [-]

Database links

Mature cin-miR-5607-5p

Accession MIMAT0022341
Description Ciona intestinalis cin-miR-5607-5p mature miRNA
Sequence 1 - UGUGGUAUUGAGAAUUAAAUUU - 22
Evidence not_experimental

Mature cin-miR-5607-3p

Accession MIMAT0022342
Description Ciona intestinalis cin-miR-5607-3p mature miRNA
Sequence 32 - AUUUAAUUUUCGUCCCAAAU - 51
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52