miRBase entry: cin-mir-5608

Stem-loop cin-mir-5608


Accession
MI0019174
Description
Ciona intestinalis cin-mir-5608 precursor miRNA


Sequence

10 reads, 6 reads per million, 2 experiments
UUUUAUCCCGAUCGUGGUACUAGAaaUUUUAUCACUGUCGUGGUACCGG
...((((.((((.((((((..(....)..)))))).)))).))))....

Structure
-UUU    C    C      CU G 
    UAUC CGAU GUGGUA  A A
    |||| |||| ||||||  |  
    AUGG GCUG CACUAU  U a
GGCC    U    U      UU a 


Annotation confidence Not enough data
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Genome context
scaffold_1052: 9900-9948 [+]

Database links

Mature cin-miR-5608-5p

Accession MIMAT0022343
Description Ciona intestinalis cin-miR-5608-5p mature miRNA
Sequence 1 - UUUUAUCCCGAUCGUGGUACUAGA - 24
Evidence not_experimental

Mature cin-miR-5608-3p

Accession MIMAT0022344
Description Ciona intestinalis cin-miR-5608-3p mature miRNA
Sequence 27 - UUUUAUCACUGUCGUGGUACCGG - 49
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52