Stem-loop cin-mir-5610

Accession

MI0019176

Description

Ciona intestinalis cin-mir-5610 precursor miRNA

Sequence

6 reads, 2 reads per million, 2 experiments

AAUAAUUAGCAUCAUCAGUCUcuaauuuauauauaauauacagcacagACUGUUGAUGUGAGUUAUUGA
(((((((.((((((.((((((......(((((...)))))......)))))).)))))).)))))))..

Structure

--       A      U      cuaauu     a 
  AAUAAUU GCAUCA CAGUCU      uauau  
  ||||||| |||||| ||||||      ||||| u
  UUAUUGA UGUAGU GUCAga      auaua  
AG       G      U      cacgac     a 

Annotation confidence Not enough data

Genome context

9p: 27347-27415 [+]

Mature cin-miR-5610-5p

• Accession: MIMAT0022347
• Description: Ciona intestinalis cin-miR-5610-5p mature miRNA
• Sequence: 1 - AAUAAUUAGCAUCAUCAGUCU - 21
• Evidence: not_experimental

Mature cin-miR-5610-3p

• Accession: MIMAT0022348
• Description: Ciona intestinalis cin-miR-5610-3p mature miRNA
• Sequence: 49 - ACUGUUGAUGUGAGUUAUUGA - 69
• Evidence: not_experimental

References

1. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52