miRBase entry: cin-mir-5612

Stem-loop cin-mir-5612


Accession
MI0019178
Description
Ciona intestinalis cin-mir-5612 precursor miRNA


Sequence

18 reads, 11 reads per million, 1 experiments
AGUCAGUUGUUGUUGUAUAUAGAuguuuuuaaguucUAUACAUCACCAGUUGUCUCAU
((.((((((.((.((((((..(((........))).)))))).)).)))))).))...

Structure
---  U      U  U      UA   guu 
   AG CAGUUG UG UGUAUA  GAu   u
   || |||||| || ||||||  |||    
   UC GUUGAC AC ACAUAU  uug   u
UAC  U      C  U      -c   aau 


Annotation confidence Not enough data
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Genome context
1q: 6076844-6076901 [-]

Database links

Mature cin-miR-5612-5p

Accession MIMAT0022351
Description Ciona intestinalis cin-miR-5612-5p mature miRNA
Sequence 1 - AGUCAGUUGUUGUUGUAUAUAGA - 23
Evidence not_experimental

Mature cin-miR-5612-3p

Accession MIMAT0022352
Description Ciona intestinalis cin-miR-5612-3p mature miRNA
Sequence 37 - UAUACAUCACCAGUUGUCUCAU - 58
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52