miRBase entry: ath-MIR5629

Stem-loop ath-MIR5629


Accession
MI0019200
Description
Arabidopsis thaliana ath-MIR5629 precursor miRNA


Sequence

uuauuuuuaauuuggacguuuaauaccucuaguauuuaauuuggaagaaaaauaccuuaauuaauuuugguuaccuaucaaaaaguugguauaaucguaccuccgaguuaacuuccgucaacuacccuaacggaaacauauucguauaaucaagaaaagcgauuguacuuauuuacauaauuaacaugaguuaaguuuuaaccacaguuaacaauuccgUUAGGGUAGUUAACGGAAGUUAacucgaagguaagauuauaccaacuuuuuaaaaaacgaaaguuuuaauaaguaaccaaaauuaacuaagguguuuuucuuccaaauuaaauaguagagguauuaaacg
................(((((((((((((((.(((((((((((((((((((((((((((.((((((((((((((.(((.(((((((((((((((((.(((((.(((((((((((((((.((((((((((((((((........((((((((.........))))))))............(((((.((.(((((...)))))))..)))))...)))))))))))))))).))))))))))))))).))))).)))))))))))))))))..(((((....))))).))).)))))))))))))).))))))))))))))))))))))))))).)))))))))))))))

Structure
uuauuuuuaauuugga               g                           a              c   ----------------c                 g     c               c                acauauucguauaaucaagaaaagcgauuguacuuauuuacauaa     -a  a     g 
                cguuuaauaccucua uauuuaauuuggaagaaaaauaccuua uuaauuuugguuac uau                 aaaaaguugguauaauc uaccu cgaguuaacuuccgu aacuacccuaacggaa                                             uuaac  ug guuaa  
                ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||                 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||                                             |||||  || ||||| u
                gcaaauuauggagau auaaauuaaaccuucuuuuuguggaau aauuaaaaccaaug aua                 uuuuucaaccauauuag augga gcucaAUUGAAGGCA UUGAUGGGAUUgccuu                                             aauug  ac caauu  
----------------               g                           c              a   auuuugaaagcaaaaaa                 a     a               A                ------------------------------------------aac     ac  -     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 3802714-3803062 [+]

Database links

Mature ath-miR5629

Accession MIMAT0022388
Description Arabidopsis thaliana ath-miR5629 mature miRNA
Sequence 220 - UUAGGGUAGUUAACGGAAGUUA - 241
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176