miRBase entry: ath-MIR5631

Stem-loop ath-MIR5631


Accession
MI0019202
Description
Arabidopsis thaliana ath-MIR5631 precursor miRNA


Sequence

840 reads, 5.0 reads per million, 110 experiments
aaaaUUAUGUCCUUCCUGCCAUAUUAuauuuaggaaaaaauaauaucguauuauacauauaaacagaagccucuuaaauaauuuuuuccuaaauauauaauaUGGCAGGAAAGACAUAAUUUU
(((((((((((.(((((((((((((((((((((((((((((.((((.(((...)))))))....(((....)))......))))))))))))..))))))))))))))))).)))))))))))

Structure
           C                 --            -------------------a    c   u 
aaaaUUAUGUC UUCCUGCCAUAUUAuau  uuaggaaaaaau                    auau gua  
||||||||||| |||||||||||||||||  ||||||||||||                    |||| ||| u
UUUUAAUACAG AAGGACGGUauaauaua  aauccuuuuuua                    uaua cau  
           A                 ua            auaaauucuccgaagacaaa    -   a 


Annotation confidence High
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Genome context
chr5: 7122566-7122688 [-]

Database links

Mature ath-miR5631-5p

Accession MIMAT0053921
Description Arabidopsis thaliana ath-miR5631-5p mature miRNA
Sequence 5 - UUAUGUCCUUCCUGCCAUAUUA - 26
Evidence experimental
unknown

Mature ath-miR5631-3p

Accession MIMAT0022390
Description Arabidopsis thaliana ath-miR5631-3p mature miRNA
Sequence 103 - UGGCAGGAAAGACAUAAUUUU - 123
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176