Stem-loop ath-MIR5020c

Accession

MI0019203

Description

Arabidopsis thaliana ath-MIR5020c precursor miRNA

Literature search

1 open access papers mention ath-MIR5020c
(6 sentences)

Sequence

2155 reads, 14.0 reads per million, 166 experiments

gagugauggccaUGGCAUGGAAGAAGGUGAGACuugccugaaucgugaaucaaaaccuccaugauuaucacuacaAGUCGUACCUUUUUCCUAGCCAUGAuaaucacug
.((((((...((((((..(((((((((((.((((((..(((((((((............))))))..)))...)))))).)))))))))))..))))))...)))))).

Structure

g      ggc      AU           A      -cc   --      aauca 
 agugau   caUGGC  GGAAGAAGGUG GACuug   uga  aucgug     a
 ||||||   ||||||  ||||||||||| ||||||   |||  ||||||      
 ucacua   GUACCG  CCUUUUUCCAU CUGAac   acu  uaguac     a
g      auA      AU           G      auc   au      cucca 

Annotation confidence High

Genome context

chr2: 4770538-4770646 [+]

Mature ath-miR5020c-5p

• Accession: MIMAT0022391
• Description: Arabidopsis thaliana ath-miR5020c-5p mature miRNA
• Sequence: 13 - UGGCAUGGAAGAAGGUGAGAC - 33
• Evidence: experimental ; Illumina [1]

Mature ath-miR5020c-3p

• Accession: MIMAT0053922
• Description: Arabidopsis thaliana ath-miR5020c-3p mature miRNA
• Sequence: 76 - AGUCGUACCUUUUUCCUAGCCAUGA - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176