miRBase entry: ath-MIR5633

Stem-loop ath-MIR5633


Accession
MI0019205
Description
Arabidopsis thaliana ath-MIR5633 precursor miRNA


Sequence

2361 reads, 17.0 reads per million, 138 experiments
ucuacaaauucuuugguuugauaugaaggaaagaUAUGAUCAUCAGAAAACAGUGauuuuguuuaaagcucguuauauaugauuggauucauaugagaauucaaguauguaagcgaguauaacucagucuuguuuaaauuauuuucauauugaaauuauguggagagaaaaucauaugcaaauaaguuagaaaaucauggauccacauaauuccaauuugaaagugaugagcucuauucaguuauagacuugaagucuuguaaucucuuaugaaucuaaucauagcgagcuuuagguaauAUCACAGUUUUCUAUGAUCAUAccuuuacuuuaaaucauuccaaaguauuugugga
(((((((((.((((((..((((.(((((..(((.(((((((((.(((((((.(((((.(((((((((((((((....((((((((((((((((.((((...((((....((((....(((((((.(((...((((..((((((((((.((((.(((((((((((.............((......))..............))))))))))).)))).))))))))))))))...))).)))))))..))))....))))...)))).))))))))))))))))))))))))))))))).))))).)))))))))))))))).)))..))))).))))..)))))).)))))))))

Structure
         u      uu    a     ga   a         C       A     u               uaua                u    auu    uaug    cgag       c   cuu    aa          u    a           -gagaaaaucauau  aa 
ucuacaaau cuuugg  ugau ugaag  aag UAUGAUCAU AGAAAAC GUGau uuguuuaaagcucgu    uaugauuggauucaua gaga   caag    uaag    uauaacu agu   guuu  auuauuuuca auug aauuaugugga              gc  a
||||||||| ||||||  |||| |||||  ||| ||||||||| ||||||| ||||| |||||||||||||||    |||||||||||||||| ||||   ||||    ||||    ||||||| |||   ||||  |||||||||| |||| |||||||||||              ||   
agguguuua gaaacc  acua auuuc  uuc AUACUAGUA UCUUUUG CACUA aauggauuucgagcg    auacuaaucuaaguau cucu   guuc    guuc    auauuga uua   cgag  uagugaaagu uaac uuaauacaccu              ug  u
         u      uu    a     au   c         -       A     u               ----                u    aau    ugaa    --ag       c   ucu    --          u    c           agguacuaaaagau  aa 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
chr3: 19544751-19545106 [+]

Database links

Mature ath-miR5633-5p

Accession MIMAT0022393
Description Arabidopsis thaliana ath-miR5633-5p mature miRNA
Sequence 35 - UAUGAUCAUCAGAAAACAGUG - 55
Evidence experimental
Illumina [1]

Mature ath-miR5633-3p

Accession MIMAT0053923
Description Arabidopsis thaliana ath-miR5633-3p mature miRNA
Sequence 301 - AUCACAGUUUUCUAUGAUCAUA - 322
Evidence experimental
unknown

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176