Stem-loop ath-MIR5635a

Accession

MI0019207

Description

Arabidopsis thaliana ath-MIR5635a precursor miRNA

Literature search

1 open access papers mention ath-MIR5635a
(1 sentences)

Sequence

auuaauuaacaccgagaaaaauguuauuuuauaccugaacuuucaaaaaguggccaaauuaaccgugaauuuuugaaaugaucguuuuauaccucaacaaaaaguugacuucuaauuuaaccuauaaguuaucguugacccggccaaaucgacucaccauuaacacuucuuaacagcucuccuaacagcguaacuaacaacuguuuuuguccuuaaaccaacaauaacggcuguuaggccauguuuuguaacggcuguuaggaacgcUGUUAAGGAGUGUUAACGGUGaguauauuuggccgggucaacgacaaauuauaggucaaauuagaagucaacgauaaauuauagguuaaauuagaagucaacuuuuuguugagguauaaaacgaccauuucaaaaguucacgguuaauuuggccauuuuuugaaaguucagguau
......(((((..........)))))....((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((..(((((((.((((((((((((((((((..((((((((((....((((((.(((((.((((..........)))).))))).)))))).....(((....))).))))))))))..)))))))))))))))))).)))))))..))))))))))))))))(((.........)))...............))))).)))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

auuaauuaacaccgagaaaaauguuauuuu                                                  a                                              g     ------------------------------                cg       a                  uc          ------------guaa      a     u    ccuu 
                              auaccugaacuuucaaaaaguggccaaauuaaccgugaauuuuugaaaug ucguuuuauaccucaacaaaaaguugacuucuaauuuaaccuauaa uuauc                              guugacccggccaaau  acucacc uuaacacuucuuaacagc  uccuaacagc                cuaaca cuguu uugu    a
                              |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||                              ||||||||||||||||  ||||||| ||||||||||||||||||  ||||||||||                |||||| ||||| ||||     
                              uauggacuugaaaguuuuuuaccgguuuaauuggcacuugaaaacuuuac agcaaaauauggaguuguuuuucaacugaagauuaaauuggauauu aauag                              caacugggccgguuua  ugaGUGG AAUUGUGAGGAAUUGUcg  aggauugucg                gauugu ggcaa aaca    a
------------------------------                                                  c                                              a     caacugaagauuaaacuggauauuaaacag                ua       C                  ca          gcaauguuuuguaccg      c     u    acca 

Annotation confidence Not enough data

Genome context

chr5: 6926005-6926446 [+]

Mature ath-miR5635a

• Accession: MIMAT0022395
• Description: Arabidopsis thaliana ath-miR5635a mature miRNA
• Sequence: 268 - UGUUAAGGAGUGUUAACGGUG - 288
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176