Stem-loop ath-MIR5637

Accession

MI0019209

Description

Arabidopsis thaliana ath-MIR5637 precursor miRNA

Sequence

22422 reads, 130.0 reads per million, 185 experiments

aagaccaucuccAAUGCGCAACUCUAUAUUUCCucuauuuuacaguugacucuauaaaauauaguugauuuuacugcauuguaugccucuaaaauagaggaaaaauguagagauugcucuuuuauuagcucaacuauauauucucuaaacucuaaaauagaggAAAAUAUAGAGUUGGGCAUUUGagaugcucua
.(((.((((((.(((((.((((((((((((((((((((((((.((((......(((...(((((((((.....(((((((.....((((((...))))))...))))))).....(((........)))))))))))))))......)))).))))))))))).))))))))))))).))))).)))))).))).

Structure

a   c      c     G             -           c    gacucu   aaa         --------------uuuua       guaug      a 
 aga caucuc AAUGC CAACUCUAUAUUU CCucuauuuua aguu      aua   uauaguuga                   cugcauu     ccucua  
 ||| |||||| ||||| ||||||||||||| ||||||||||| ||||      |||   |||||||||                   |||||||     |||||| a
 ucu guagaG UUACG GUUGAGAUAUAAA ggagauaaaau ucaa      uau   auaucaacu                   gauguaa     ggagau  
a   c      U     G             A           c    aucucu   ---         cgauuauuuucucguuaga       --aaa      a 

Annotation confidence Medium

Genome context

chr2: 12270179-12270373 [-]

Mature ath-miR5637-5p

• Accession: MIMAT0022397
• Description: Arabidopsis thaliana ath-miR5637-5p mature miRNA
• Sequence: 13 - AAUGCGCAACUCUAUAUUUCC - 33
• Evidence: experimental ; Illumina [1]

Mature ath-miR5637-3p

• Accession: MIMAT0053927
• Description: Arabidopsis thaliana ath-miR5637-3p mature miRNA
• Sequence: 164 - AAAAUAUAGAGUUGGGCAUUUG - 185
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176