Stem-loop ath-MIR5641

Accession

MI0019214

Description

Arabidopsis thaliana ath-MIR5641 precursor miRNA

Sequence

acgaaacaauaaaauccccaauucaauuuugaaaucccuaauucuaucaucuucuucacucuucuuccauagcuaauugaaaucccaaauucuucuaucuuccauaucuucuucuaucauuuucuuuaaguuugauuucgaaaucucuaauuuuaucaucuucuuccauuguuugauuucgaaauccuaauucuuccaucuucauccaucuuucuagcuccgucgauuaccaaguaucuccuccaugugaauauacuuauaccaaaagugguccacgugaggaagaaucuucacagcucaaucccaaacguuccucgcaugguugacgucuuuguuccauagcuucauuaagcaaccauggaugauaaaagaugauaugaaagcuauggaaguuugauuaaguuagaagauggacgaauuagggauugaagaUGGAAGAAGAUGAUAGAAUUAgggauuuuaaaauugaauuggggauuuugcuguuucau
..((((((.((((((((((((((((((((((((((((((((((((((((((((((((..(((((...((........)).((((((.(((((.(((((((((...(((..(((((((..(((((....((((.((((((((((((.............................))))))))))))..))))....((((((((((((((((...((((..((.((..((.(((.((.((..((((((((..........((((....))))....(((((((....)))))))....................))))))))..)).))))).)))).)))))).....))).....))))))))....)))))....)))))..)))))))...))).......))))))))).))))).)))))))))))..)))))))))))))))))))))))))))))))))))))))))))))))).))))))..

Structure

ac      a                                                ac     uuccauagcuaauuga      a     u         ----cau   -uu       ca     uuuaaguuugauuucgaaaucucuaauuuuaucaucuucuuccauuguuugauuucgaaauccuaauucuuc     ----        -----   --ucu    cc  c  uu  c   u  c  cu        auauacuuauaccaaaagugguccacgugag 
  gaaaca uaaaauccccaauucaauuuugaaaucccuaauucuaucaucuucuuc  ucuuc                aauccc aauuc ucuaucuuc       auc   cuucuau  uuuuc                                                                        caucu    ucauccau     cuu     agcu  gu ga  ac aag au uc  ccauguga                               g
  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||                |||||| ||||| |||||||||       |||   |||||||  |||||                                                                        |||||    ||||||||     |||     ||||  || ||  || ||| || ||  ||||||||                                
  cuuugu guuuuagggguuaaguuaaaauuuuagggAUUAAGAUAGUAGAAGAAG  agaag                uuaggg uuaag agguagaag       uag   gaaggua  gaaag                                                                        guaga    aguaggua     gaa     ucga  ua cu  ug uuc ug ag  gguacgcu                               a
ua      c                                                GU     ----------------      a     c         auugaau   uuu       uc     --------------------------------------------------------------------uaua     aaau        ccaac   uuacu    --  c  --  u   -  c  uu        ccuugcaaacccuaacucgacacuucuaaga 

Annotation confidence Not enough data

Genome context

chr5: 9022836-9023326 [+]

Mature ath-miR5641

• Accession: MIMAT0022402
• Description: Arabidopsis thaliana ath-miR5641 mature miRNA
• Sequence: 433 - UGGAAGAAGAUGAUAGAAUUA - 453
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176