Stem-loop ath-MIR5641

Accession

MI0019214

Description

Arabidopsis thaliana ath-MIR5641 precursor miRNA

Sequence

3775 reads, 23.0 reads per million, 171 experiments

acgaaacaauaaaauccccaauucaauuuugaaaucccuaauucuaucaucuucuucacucuucuuccauagcuaauugaaaucccaaauucuucuaucuuccauaucuucuucuaucauuuucuuuaaguuugauuucgaAAUCUCUAAUUUUAUCAUCUUcuuccauuguuugauuucgaaauccuaauucuuccaucuucauccaucuuucuagcuccgucgauuaccaaguaucuccuccaugugaauauacuuauaccaaaagugguccacgugaggaagaaucuucacagcucaaucccaaacguuccucgcaugguugacgucuuuguuccauagcuucauuaagcaaccauggaugauaaaagaugauaugaaagcuauggaaguuugauuaaguuagaagauggacgaauuagggauugaagaUGGAAGAAGAUGAUAGAAUUAgggauuuuaaaauugaauuggggauuuugcuguuucau
..((((((.((((((((((((((((((((((((((((((((((((((((((((((((..(((((...((........)).((((((.(((((.(((((((((...(((..(((((((..(((((....((((.((((((((((((.............................))))))))))))..))))....((((((((((((((((...((((..((.((..((.(((.((.((..((((((((..........((((....))))....(((((((....)))))))....................))))))))..)).))))).)))).)))))).....))).....))))))))....)))))....)))))..)))))))...))).......))))))))).))))).)))))))))))..)))))))))))))))))))))))))))))))))))))))))))))))).))))))..

Structure

ac      a                                                ac     uuccauagcuaauuga      a     u         ----cau   -uu       ca     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uuua    -u            UCUAAUUUUAUCA 
  gaaaca uaaaauccccaauucaauuuugaaaucccuaauucuaucaucuucuuc  ucuuc                aauccc aauuc ucuaucuuc       auc   cuucuau  uuuuc                                                                                                                                                                                          aguu  gauuucgaAAUC             U
  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||                |||||| ||||| |||||||||       |||   |||||||  |||||                                                                                                                                                                                          ||||  ||||||||||||             C
  cuuugu guuuuagggguuaaguuaaaauuuuagggAUUAAGAUAGUAGAAGAAG  agaag                uuaggg uuaag agguagaag       uag   gaaggua  gaaag                                                                                                                                                                                          uuaa  cuaaagcuuuag             U
ua      c                                                GU     ----------------      a     c         auugaau   uuu       uc     uauaguagaaaauaguagguaccaacgaauuacuucgauaccuuguuucugcaguugguacgcuccuugcaaacccuaacucgacacuucuaagaaggagugcaccuggugaaaaccauauucauauaaguguaccuccucuaugaaccauuagcugccucgaucuuucuaccuacuucuaccuuc    uc            uuuguuaccuucU 

Annotation confidence Low

Genome context

chr5: 9022836-9023326 [+]

Mature ath-miR5641-5p

• Accession: MIMAT0053931
• Description: Arabidopsis thaliana ath-miR5641-5p mature miRNA
• Sequence: 142 - AAUCUCUAAUUUUAUCAUCUU - 162
• Evidence: experimental ; unknown

Mature ath-miR5641-3p

• Accession: MIMAT0022402
• Description: Arabidopsis thaliana ath-miR5641-3p mature miRNA
• Sequence: 433 - UGGAAGAAGAUGAUAGAAUUA - 453
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176