Stem-loop ath-MIR5642a

Accession

MI0019215

Description

Arabidopsis thaliana ath-MIR5642a precursor miRNA

Literature search

2 open access papers mention ath-MIR5642a
(7 sentences)

Sequence

cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcggcuaggaacuggaacgagacggguagcaaagauuucgaguagcacuucauacuaccguggguuuuuuaaaccuuccccuaguuuuguugauguuauuccgagaauuagcaaaccguaacgaagauguucuuggcaaccaucuuuugaugggaguccggcuguucgaaagccggccaagggugaugaacgaaaugugaacccuugucucgccuagguuggaugggcgugcuucguuggaaagcauggauccgccuaggcugucccgaagguaUCUCGCGCUUGUACGGCUUUggcucggauucg
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((((((((((..((.((((....((((((...)))))).....))))..))..).))))))).))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).

Structure

cau      --   u       cc         ---------------------------------------------------------------------------------------------------gcgaggugugagugucgcccaugggcaucgacaccuugcg         uggaa  ag    gua  a  ga     -       - uu  -u    -ccgu      u 
   ggaucc  gcc aggcugu  cgaguguga                                                                                                                                           gcuaggaac     cg  acgg   gc aa  uuucg aguagca c  ca  acua     ggguuu  
   ||||||  ||| |||||||  |||||||||                                                                                                                                           |||||||||     ||  ||||   || ||  ||||| ||||||| |  ||  ||||     |||||| u
   cuuagg  cgg UUCGGCA  GUUCGCGCU                                                                                                                                           cgguucuug     gc  ugcc   cg uu  agagc uuauugu g  gu  ugau     uccaaa  
--g      cu   U       -U         CUauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa         uagaa  aa    aaa  a  -a     c       a uu  uu    ccccu      u 

Annotation confidence Not enough data

Genome context

chr3: 14196774-14197147 [+]

Mature ath-miR5642a

• Accession: MIMAT0022403
• Description: Arabidopsis thaliana ath-miR5642a mature miRNA
• Sequence: 343 - UCUCGCGCUUGUACGGCUUU - 362
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176