Accession
MI0019215
Description
Arabidopsis thaliana
ath-MIR5642a precursor miRNA
Literature search
2 open access papers mention ath-MIR5642a
(7 sentences)
(7 sentences)
Sequence
4826262
reads,
13467.0
reads per million, 185 experiments
cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcggcuAGGAACUGGAACGAGACGGGUagcaaagauuucgaguagcacuucauacuaccguggguuuuuuaaaccuuccccuaguuuuguugauguuauuccgagaauuagcaaaccguaacgaagauguucuuggcaaccaucuuuugaugggaguccggcuguucgaaagccggccaagggugaugaacgaaaugugaacccuugucucgccuagguuggaugggcgugcuucguuggaaagcauggauccgccuaggcugucccgaagguaUCUCGCGCUUGUACGGCUUUggcucggauucg
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((((((((((..((.((((....((((((...)))))).....))))..))..).))))))).))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((((((((((..((.((((....((((((...)))))).....))))..))..).))))))).))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).
Structure
cau -- u cc ---------------------------------------------------------------------------------------------------gcgaggugugagugucgcccaugggcaucgacaccuugcg UGGAA AG GUa a ga - - uu -u -ccgu u ggaucc gcc aggcugu cgaguguga gcuAGGAAC CG ACGG gc aa uuucg aguagca c ca acua ggguuu |||||| ||| ||||||| ||||||||| ||||||||| || |||| || || ||||| ||||||| | || |||| |||||| u cuuagg cgg UUCGGCA GUUCGCGCU cgguucuug gc ugcc cg uu agagc uuauugu g gu ugau uccaaa --g cu U -U CUauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa uagaa aa aaa a -a c a uu uu ccccu u
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr3: 14196774-14197147 [+]
Database links
Mature ath-miR5642a-5p
| Accession | MIMAT0053932 |
| Description | Arabidopsis thaliana ath-miR5642a-5p mature miRNA |
| Sequence | 75 - AGGAACUGGAACGAGACGGGU - 95 |
| Evidence |
experimental
unknown |
Mature ath-miR5642a-3p
| Accession | MIMAT0022403 |
| Description | Arabidopsis thaliana ath-miR5642a-3p mature miRNA |
| Sequence | 343 - UCUCGCGCUUGUACGGCUUU - 362 |
| Evidence |
experimental
Illumina [1] |
References
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