Stem-loop ath-MIR5643a

Accession

MI0019216

Description

Arabidopsis thaliana ath-MIR5643a precursor miRNA

Sequence

guguagccguaauccguaugagucuuugucuuuguaucuucuaacaaggauacaauauuuAGGCUUUUAAGAUCUGGUUGCga
.((((((((..(((.....((((((......(((((((((......))))))))).....))))))....))).)))))))).

Structure

g        ua   cguau      uugucu         cu 
 uguagccg  auc     gagucu      uuguaucuu  a
 ||||||||  |||     ||||||      |||||||||   
 gCGUUGGU  UAG     UUCGGA      aacauagga  a
a        -C   -AAUU      -uuuau         ac 

Annotation confidence Not enough data

Genome context

chr5: 11667797-11667879 [+]

Mature ath-miR5643a

• Accession: MIMAT0022404
• Description: Arabidopsis thaliana ath-miR5643a mature miRNA
• Sequence: 61 - AGGCUUUUAAGAUCUGGUUGC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176