Stem-loop ath-MIR5635d

Accession

MI0019217

Description

Arabidopsis thaliana ath-MIR5635d precursor miRNA MIR5635

Gene
family

RF03444; MIR5635

Literature search

1 open access papers mention ath-MIR5635d
(1 sentences)

Sequence

88901 reads, 589.0 reads per million, 184 experiments

aguugacuucuaauuuAACCUAUAAGUUAUCGUUGAcacggccaaaucgacucaccauuaacacuucuuaacagcucuccuaacagcguaacuaacaacuguuuuuguccuuaaaccaacgauaacggcuguuaggccauguuuuguaacggcuguuaggagcgcUGUUAAGGAGUGUUAACGGUGagucuauuuggcugggucaacgauaaauuauauguuaaauuagaagucaaca
.((((((((((((((((((.(((((.(((((((((((.(((((((((.((((((((.((((((((((((((((((.(((((((((((....((((((.(((((.((((..........)))).))))).)))))).....(((....))).))))))))))).)))))))))))))))))).)))))))).))))))))).))))))))))).))))).)))))))))))))))))).

Structure

a                  C     G           a         c        a                  u           ------------guaa      a     u    ccuu 
 guugacuucuaauuuAAC UAUAA UUAUCGUUGAc cggccaaau gacucacc uuaacacuucuuaacagc cuccuaacagc                cuaaca cuguu uugu    a
 |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||||                |||||| ||||| ||||     
 caacugaagauuaaauug auauu aauagcaacug gucgguuua cugaGUGG AAUUGUGAGGAAUUGUcg gaggauugucg                gauugu ggcaa agca    a
a                  u     a           g         u        C                  c           gcaauguuuuguaccg      c     u    acca 

Annotation confidence Low

Genome context

chr4: 1023912-1024149 [+]

Mature ath-miR5635d-5p

• Accession: MIMAT0053934
• Description: Arabidopsis thaliana ath-miR5635d-5p mature miRNA
• Sequence: 17 - AACCUAUAAGUUAUCGUUGA - 36
• Evidence: experimental ; unknown

Mature ath-miR5635d-3p

• Accession: MIMAT0022405
• Description: Arabidopsis thaliana ath-miR5635d-3p mature miRNA
• Sequence: 166 - UGUUAAGGAGUGUUAACGGUG - 186
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176