Stem-loop ath-MIR5638b

Accession

MI0019219

Description

Arabidopsis thaliana ath-MIR5638b precursor miRNA

Literature search

1 open access papers mention ath-MIR5638b
(1 sentences)

Sequence

aacaauguuguggucuuucgaugagagaaugugcuuggggacaauuggagcaguuugacucccuuacgguuaguaugacgguuugaaagugaaagaacuuugguauguuucuagaaaguaaauaaaugaauccaaguuucgagcacacugucuuuacacuaguguggcagcccaccaaauaaccauugugauuguucauaaaguguuaccuucauauuuugcaaaaccucuuaaccaaucacgagugcaaaguagaguuugaacauuucauuuaacaaucACAGUGGUCAUCUGGUGGGCUguagaauuuaucacuaugcccaccaaaguaaagauggugugcucaaaacuuggauucgauuacuuuuucgucaaaacauaccaaagcucucucacuuuucaaacuucaaaauaacaguaguaagggaaucgaucuguaccaauuguacucaaacacacucucucaucc
...................(((((((((.((((.(((((.((((((((.((((.((((.((((((((.((((...(((.(((((((((((((.(((.((((((((((((((.(((((((((.....(((((((((((((.(((((((((((((((((....(((.((((((((((((.((.(((((((((((((((....(((((((...(((.(((((((((....(((............)))))))))))))))....))))))).....))))))))))))))).)).)))))))))((((.........))))))))))....))))))))))))))))).))))))))))))).))))))))).)...))))))))))))).))).)))).))))))))))))...))))....)))))))).)))).)))).)))))))).))))).)))).))))))))).

Structure

aacaauguuguggucuuuc         a    c     g        a    u    c        ---g    gua   c         -    a   a             --- u         auaaa             c                 acua   u   -----------------         a  a               -caua       -acc   a         aaac   uuaac 
                   gaugagaga ugug uuggg acaauugg gcag uuga ucccuuac    guua   uga gguuugaaa guga aga cuuugguauguuu   c agaaaguaa     ugaauccaaguuu gagcacacugucuuuac    gug ggc                 agcccacca au accauugugauuguu     aaguguu    uuc uauuuugca    cuc     c
                   ||||||||| |||| ||||| |||||||| |||| |||| ||||||||    ||||   ||| ||||||||| |||| ||| |||||||||||||   | |||||||||     ||||||||||||| |||||||||||||||||    ||| |||                 ||||||||| || |||||||||||||||     |||||||    ||| |||||||||    |||      
                   cuacucucu acac aacuc uguuaacc uguc agcu agggaaug    caau   acu ucaaacuuu cacu ucu gaaaccauacaaa   g uuuuucauu     gcuuagguucaaa cucgugugguagaaaug    cac ccg                 UCGGGUGGU UA UGGUGACAcuaacaa     uuuacaa    gag augaaacgu    gag     a
------------------c         c    a     a        a    u    a        auga    aaa   -         u    c   c             acu c         ----a             a                 aaac   -   uaucacuauuuaagaug         C  C               uuuac       guuu   -         ----   cacua 

Annotation confidence Not enough data

Genome context

chr5: 14099737-14100205 [+]

Mature ath-miR5638b

• Accession: MIMAT0022407
• Description: Arabidopsis thaliana ath-miR5638b mature miRNA
• Sequence: 281 - ACAGUGGUCAUCUGGUGGGCU - 301
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176