Stem-loop ath-MIR5645b

Accession

MI0019221

Description

Arabidopsis thaliana ath-MIR5645b precursor miRNA

Sequence

cgacaaauaaaucguaaacguuuuguugacuuuugaaauaaaugacaaaguuuuuguugacuugucAUUUGAGUCAUGUCGUUAAGuagguuaacauaaaaaauuuaagacguuaaugucucguuuaucuccuccguaaaaacaaaacaacguuguuuauugaagcucguuuugucuguugaaacaaauuuaaacccuaaauccucaaaucgauuucauuauuuaugauuuugaggccaaggugggucugugauuuugagauaaugauaucgauuuggagauuuaagguuuauauuuguuucaagagacaaaacgacgucguuuugucucuucaauaaacaacguuguuuuguucuaacagaucaaauaaacaagacauuaacaccguaaaaaaauucuguuaaccuauuuaacgauaugacucaaauggcaagucaacaaaaacuuugucauuuguuucgaaagucaacaaaaacuuuacgauuuauuugucu
.(((((((((((((((((..((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.......((((.(..((((((((((.((((((....((.((...(((((((((((((((((((((((((...(((((((((.(((((((((((.((((((.((((((.((((((((((.(((((((((..((((...(((((......)))))..))))...))))))))).)))))))))).)))))).)))))).))))))))))).)))))))))((((......)))).)))))))))))))))))))))))))...)).))....)))))).))))))))))..).)))).......))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))..))))))))))))))))).

Structure

c                 cg                                                                            uaaaaaa    a ac          c      cucc  c  aaa                         ------------cuc         g           u      c      c          u         -au    uug     aa 
 gacaaauaaaucguaaa  uuuuguugacuuuugaaauaaaugacaaaguuuuuguugacuugucAUUUGAGUCAUGUCGUUAAGuagguuaaca       uuua g  guuaaugucu guuuau    uc gu   aacaaaacaacguuguuuauugaag               guuuugucu uugaaacaaau uaaacc uaaauc ucaaaucgau ucauuauuu   gauu   aggcc  g
 |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |  |||||||||| ||||||    || ||   |||||||||||||||||||||||||               ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||||||   ||||   |||||   
 cuguuuauuuagcauuu  aaaacaacugaaagcuuuguuuacuguuucaaaaacaacugaacgguaaacucaguauagcaauuuauccaauugu       aaau c  caauuacaga caaaua    ag ca   uuguuuuguugcaacaaauaacuuc               caaaacaga aacuuuguuua auuugg auuuag gguuuagcua aguaauaga   uuag   ucugg  g
u                 ca                                                                            cuuaaaa    g ca          a      aacu  a  auc                         ucuguuuugcugcag         g           u      a      a          u         guu    -ug     gu 

Annotation confidence Not enough data

Genome context

chr4: 4889421-4889914 [+]

Mature ath-miR5645b

• Accession: MIMAT0022409
• Description: Arabidopsis thaliana ath-miR5645b mature miRNA
• Sequence: 67 - AUUUGAGUCAUGUCGUUAAG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176