Stem-loop ath-MIR5646

Accession

MI0019222

Description

Arabidopsis thaliana ath-MIR5646 precursor miRNA

Sequence

caucaccaacgagcuauuggcccaauacuaaaucuccguggaggugauagGUUCGAGGCACGUUGGGAGG
..((.((((((.(((.((((.((........(((((....)))))....)).))))))).))))))))..

Structure

ca  a      a   a    c  aauacuaa     c 
  uc ccaacg gcu uugg cc        aucuc g
  || |||||| ||| |||| ||        |||||  
  AG GGUUGC CGG AGCU Gg        uggag u
GG  -      A   -    U  ----auag     g 

Annotation confidence Not enough data

Genome context

chr2: 3517383-3517452 [-]

Mature ath-miR5646

• Accession: MIMAT0022410
• Description: Arabidopsis thaliana ath-miR5646 mature miRNA
• Sequence: 51 - GUUCGAGGCACGUUGGGAGG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176