Stem-loop ath-MIR5647

Accession

MI0019223

Description

Arabidopsis thaliana ath-MIR5647 precursor miRNA

Sequence

auuaaauccucaagaaccauacagcuugauaugagagucuucaaaccugagucgccaacaaacuuaacccccuuuaaauauauacaaaagguaaagaaaccaauuuugauuucggaugauaaaagacaacacaauggagauuuaaauccaccaaagucgcacaaaaauagaacaagauaggcaucuuaacucucuaacguuuuuuagagucuuuggaaccuuaguuaugaugccuuucucgcucuauacauguucgaauuuggugaauuugacucucuaauguguuguauuugauaauccaaauucaaaaucgguuucuauaccuugugucaaugcuauguauuuagagaaggUCAAGUUUGAUGACGAUUCCAuuuuggagacucucuaauuaaguuguccuauucuugaggauuuaac
.(((((((((((((((....((((((((((..(((((((((((((...((((((.((.(((((((.(((..(((((((((((((((.((((((.(((((((.(((((((.((.((((....(((.((((((((.((((((.((((((.(((((((.(((.(((...(((((.(.(((.(((((((.(((((((((((......)))))).............))))).))))))).))).).)))))...))).))).))))))).)))))).)))))).)))))))).)))....)))).)).))))))).))))))).)))))).))).......))))))))))))..))).))))))).)).))))))...)))))))))))))..))))))))))....))))))))))))))).

Structure

a               ccau          au             ccu      c  a       a   cc            -------   a      a       a       u  c    gaua   g        a      u      c       g   c   aaa     a a   u       u     -------------      cg 
 uuaaauccucaagaa    acagcuugau  gagagucuucaaa   gagucg ca caaacuu acc  cuuuaaauauau       aca aaggua agaaacc auuuuga uu ggau    aaa acaacaca uggaga uuaaau caccaaa ucg aca   auaga c aga aggcauc uaacu             cucuaa  u
 |||||||||||||||    ||||||||||  |||||||||||||   |||||| || ||||||| |||  ||||||||||||       ||| |||||| ||||||| ||||||| || ||||    ||| |||||||| |||||| |||||| ||||||| ||| |||   ||||| | ||| ||||||| |||||             ||||||   
 aauuuaggaguucuu    uguugaauua  cucucagagguuu   CUUAGC GU GUUUGAA Ugg  gagauuuaugua       ugu uuccau ucuuugg uaaaacu aa ccua    uuu uguugugu aucucu aguuua gugguuu agc ugu   uaucu g ucu uccguag auuga             gagauu  u
c               aucc          au             uAC      A  A       C   aa            ucguaac   g      a       c       u  a    auag   a        a      c      a       a   u   aca     c c   u       u     uuccaagguuucu      uu 

Annotation confidence Not enough data

Genome context

chr1: 22084264-22084683 [-]

Mature ath-miR5647

• Accession: MIMAT0022411
• Description: Arabidopsis thaliana ath-miR5647 mature miRNA
• Sequence: 354 - UCAAGUUUGAUGACGAUUCCA - 374
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176