miRBase entry: ath-MIR5650

Stem-loop ath-MIR5650


Accession
MI0019227
Description
Arabidopsis thaliana ath-MIR5650 precursor miRNA


Sequence

12133 reads, 123.0 reads per million, 147 experiments
auUUGUUUUGGAUCUUAGAUACAcauauaguuugcuuuuccuuuauaaacaaacuauaugugUAUCUAAGAUUCAAAACAAAC
.(((((((((((((((((((((((((((((((((.(((........)))))))))))))))))))))))))))))))))))).

Structure
a                                 c   ucc 
 uUUGUUUUGGAUCUUAGAUACAcauauaguuug uuu   u
 ||||||||||||||||||||||||||||||||| |||    
 AAACAAAACUUAGAAUCUAUguguauaucaaac aaa   u
C                                 -   uau 


Annotation confidence High
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Genome context
chr2: 19686957-19687039 [+]

Database links

Mature ath-miR5650-5p

Accession MIMAT0022416
Description Arabidopsis thaliana ath-miR5650-5p mature miRNA
Sequence 3 - UUGUUUUGGAUCUUAGAUACA - 23
Evidence experimental
Illumina [1]

Mature ath-miR5650-3p

Accession MIMAT0053943
Description Arabidopsis thaliana ath-miR5650-3p mature miRNA
Sequence 63 - UAUCUAAGAUUCAAAACAAAC - 83
Evidence experimental
unknown

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176