Stem-loop ath-MIR5635b

Accession

MI0019229

Description

Arabidopsis thaliana ath-MIR5635b precursor miRNA MIR5635

Gene
family

RF03444; MIR5635

Literature search

1 open access papers mention ath-MIR5635b
(1 sentences)

Sequence

74959 reads, 538.0 reads per million, 183 experiments

aucguuGACCCGGUCAAAGCGACUCAUUGUuaacacuucuuaacagcucuccuaacagcguaacuaacaacuguuuucguccuuaaaccaacgauaacggcuguuaggccauguuuuguaagggcuguuaggagcgcUGUUAAGGAGUGUUAACGGUGagucgauuuggccuggucaacgau
((((((((((.(((((((.((((((((((((((((((((((((((((.(((((((((((....((((((.(((((.((((..........)))).))))).)))))).((...........))))))))))))).)))))))))))))))))))))))))))).))))))).))))))))))

Structure

          C       G                            u           ------------guaa      a     u    ccuu 
aucguuGACC GGUCAAA CGACUCAUUGUuaacacuucuuaacagc cuccuaacagc                cuaaca cuguu ucgu    a
|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||                |||||| ||||| ||||     
uagcaacugg ccgguuu gcugaGUGGCAAUUGUGAGGAAUUGUcg gaggauugucg                gauugu ggcaa agca    a
          u       a                            c           ggaauguuuuguaccg      c     u    acca 

Annotation confidence Low

Genome context

chr1: 20622538-20622719 [-]

Mature ath-miR5635b-5p

• Accession: MIMAT0053945
• Description: Arabidopsis thaliana ath-miR5635b-5p mature miRNA
• Sequence: 7 - GACCCGGUCAAAGCGACUCAUUGU - 30
• Evidence: experimental ; unknown

Mature ath-miR5635b-3p

• Accession: MIMAT0022418
• Description: Arabidopsis thaliana ath-miR5635b-3p mature miRNA
• Sequence: 138 - UGUUAAGGAGUGUUAACGGUG - 158
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176