miRBase entry: ath-MIR156i

Stem-loop ath-MIR156i


Accession
MI0019232
Description
Arabidopsis thaliana ath-MIR156i precursor miRNA

Literature search
79 open access papers mention ath-MIR156i
(762 sentences)

Sequence

24566 reads, 144.0 reads per million, 169 experiments
uagAUGACAGAAGAGAGAGAGCAgacagcuucucuaucuaaucuguggucgcuugaaugaugaguuuggcauaggaagugucaucucuacccuugaucuuucuugauucugcaucaccaccugaccauugauuccucuccgaccugauccuucuccauaaguacucucaccagagcucuuccuucuucgcucauugu
..(((((..(((((((((((((.....)).)))))....((((.(((((((..((..(((((((.....((.((((((.((((..........))))))))))))...)).))))).))..))))))).))))..((........))...........(((..((((....))))..)))..))))))..)))))..

Structure
ua     CA      ---------------------------------------------------------------------------------------------------------------------------------------------------     -  A 
  gAUGA  GAAGAG                                                                                                                                                   AGAGA GC g
  |||||  ||||||                                                                                                                                                   ||||| || a
  uuacu  cuucuu                                                                                                                                                   ucucu cg c
ug     cg      ccuucucgagaccacucucaugaauaccucuuccuaguccagccucuccuuaguuaccaguccaccacuacgucuuaguucuuucuaguucccaucucuacugugaaggauacgguuugaguaguaaguucgcuggugucuaaucua     u  a 


Annotation confidence Not enough data
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Genome context
chr1: 19806917-19807113 [-]

Database links

Mature ath-miR156i-5p

Accession MIMAT0022421
Description Arabidopsis thaliana ath-miR156i-5p mature miRNA
Sequence 4 - AUGACAGAAGAGAGAGAGCA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176