Stem-loop ath-MIR156j

Accession

MI0019234

Description

Arabidopsis thaliana ath-MIR156j precursor miRNA

Literature search

80 open access papers mention ath-MIR156j
(768 sentences)

Sequence

7787 reads, 25.0 reads per million, 171 experiments

uuUGACAGAAGAGAGAGAGCACAGuuugagucgccaauucccUUGUAGCUCUCUAGUUUAGUGuccau
...((((..(((.(((((((((((...((((.....))))..)))).)))))))..)))..))))...

Structure

uuU    GA   -G       -    uuu    c 
   GACA  AGA  AGAGAGC ACAG   gagu g
   ||||  |||  ||||||| ||||   |||| c
   cuGU  UUU  UCUCUCG UGUU   cuua c
uac    GA   GA       A    -cc    a 

Annotation confidence Medium

Genome context

chr2: 17589020-17589087 [-]

Mature ath-miR156j-5p

• Accession: MIMAT0022423
• Description: Arabidopsis thaliana ath-miR156j-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGAGAGCACAG - 24
• Evidence: experimental ; Illumina [1]

Mature ath-miR156j-3p

• Accession: MIMAT0053949
• Description: Arabidopsis thaliana ath-miR156j-3p mature miRNA
• Sequence: 43 - UUGUAGCUCUCUAGUUUAGUG - 63
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176