Stem-loop ath-MIR5653

Accession

MI0019236

Description

Arabidopsis thaliana ath-MIR5653 precursor miRNA

Literature search

1 open access papers mention ath-MIR5653
(8 sentences)

Sequence

158709 reads, 988.0 reads per million, 185 experiments

cccaauAACUCAUUUGACCCAUCAACUCAUuugagucaaaaaauuuaacucauuaggguucaUGGGUUGAGUUGAGUUGAGUUGGC
.(((((((((((((((((((((.(((((...(((((.(((...))).)))))...))))).)))))))))).))))))..))))).

Structure

c     --      -          C     AUu     c   a 
 ccaau  AACUCA UUUGACCCAU AACUC   ugagu aaa  
 |||||  |||||| |||||||||| |||||   ||||| ||| a
 GGUUG  UUGAGU GAGUUGGGUa uuggg   acuca uuu  
C     AG      U          c     auu     a   a 

Annotation confidence Low

Genome context

chr1: 19026915-19027000 [-]

Mature ath-miR5653-5p

• Accession: MIMAT0053951
• Description: Arabidopsis thaliana ath-miR5653-5p mature miRNA
• Sequence: 7 - AACUCAUUUGACCCAUCAACUCAU - 30
• Evidence: experimental ; unknown

Mature ath-miR5653-3p

• Accession: MIMAT0022425
• Description: Arabidopsis thaliana ath-miR5653-3p mature miRNA
• Sequence: 63 - UGGGUUGAGUUGAGUUGAGUUGGC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176