Stem-loop ath-MIR5654

Accession

MI0019237

Description

Arabidopsis thaliana ath-MIR5654 precursor miRNA

Literature search

1 open access papers mention ath-MIR5654
(3 sentences)

Sequence

aaAUAAAUCCCAACAUCUUCCAccuuaccggccuugaacauugauagcuguuaaaaUGGAAGAUGCUUUGGGAUUUAUUu
((((((((((((((((((((((..(((.((((..(........)..)))).)))..)))))))))..)))))))))))))

Structure

             --         cc   c    cu gaa 
aaAUAAAUCCCAA  CAUCUUCCA  uua cggc  u   c
|||||||||||||  |||||||||  ||| ||||  |    
uUUAUUUAGGGUU  GUAGAAGGU  aau gucg  a   a
             UC         aa   u    au guu 

Annotation confidence Not enough data

Genome context

chr1: 11786292-11786371 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5654

Mature ath-miR5654-5p

• Accession: MIMAT0022426
• Description: Arabidopsis thaliana ath-miR5654-5p mature miRNA
• Sequence: 3 - AUAAAUCCCAACAUCUUCCA - 22
• Evidence: experimental ; Illumina [1]

Mature ath-miR5654-3p

• Accession: MIMAT0023005
• Description: Arabidopsis thaliana ath-miR5654-3p mature miRNA
• Sequence: 57 - UGGAAGAUGCUUUGGGAUUUAUU - 79
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176


2. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86