Stem-loop ath-MIR5655

Accession

MI0019238

Description

Arabidopsis thaliana ath-MIR5655 precursor miRNA

Sequence

acaucaaguaaggguugguggugguggaggaggaggagaacauacgaaggguacuguggcggcaucucuggggaagaguaagAAGUAGACACAUAAGAAGGAGaaaaacgaaagagguuauacaaaaagaacuagagagaggauagauuuaauuaauuaccagagaaaguuugcggagagaggucuuggaagagaggcggagaagcagagaugacauagcuaauagcuucgcuugguugcucuguguguuucuucucuaaaggguuuucgaguuagucaagaucuaauuaagaccaaagugcuugccacaagaaaaaggagaaguaggguucucaauuauuacuagagagaugucucuuucucuuuauuuuuuccacguuucucucguuuuucuccuucuuaugugucuacuucuuacucuuccccagagaugccgccacaguacccuucguauguucuccuccuccuccaccaccaccaacccuuacuugaugu
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((..((((........((((((.((((((((.(.(((((((..((........))..)))))))).((((((.(((((((((((((.(((.(((.((((((.(((...((((...))))))))))...)))))).))).))))))))......((((((..((((((.......))))))))))))......((((...))))......(((((......))))).............))))).)))))))))))))))))))).......)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                                                                               aa    uuauacaa      c        ggauagauuuaauuaauuaccagagaaaguuugcg      g     -------------------------------------------------------------------------------------------        g   g   a   ---   a   cau    a 
acaucaaguaaggguugguggugguggaggaggaggagaacauacgaaggguacuguggcggcaucucuggggaagaguaagAAGUAGACACAUAAGAAGGAGaaaaacga  gagg        aaagaa uagagaga                                   gagaga gucuu                                                                                           ggaagaga gcg aga gca   gag uga   agcu  
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||        |||||| ||||||||                                   |||||| |||||                                                                                           |||||||| ||| ||| |||   ||| |||   |||| a
uguaguucauucccaaccaccaccaccuccuccuccucuuguaugcuucccaugacaccgccguagagaccccuucucauucuucaucuguguauucuuccucuuuuugcu  cucu        uuuuuu auuucucu                                   uucucu uagag                                                                                           ucuucuuu ugu ucu cgu   uuc gcu   ucga  
                                                                                                               --    -uugcacc      -        -----------------------------------      g     agaucauuauuaacucuugggaugaagaggaaaaagaacaccguucgugaaaccagaauuaaucuagaacugauugagcuuuugggaaauc        g   g   -   ugg   -   ---    u 

Annotation confidence Not enough data

Genome context

chr2: 18902541-18903035 [+]

Mature ath-miR5655

• Accession: MIMAT0022427
• Description: Arabidopsis thaliana ath-miR5655 mature miRNA
• Sequence: 83 - AAGUAGACACAUAAGAAGGAG - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176